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January 30, August 28, Archived from the original on January 15, Retrieved February 14, Retrieved November 10, The New York Times. Retrieved November 11, June 2, Retrieved January 25, Retrieved May 16, March 6, June 9, Archived from the original on May 1, Retrieved September 25, June 11, Archived from the original on October 18, Retrieved September 9, Los Angeles Times.

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January 10, Archived from the original on January 12, February 24, The Seattle Times. Associated Press. February 21, Archived from the original on March 25, October 22, Retrieved October 24, December 28, Retrieved December 28, August 24, April 2, Archived from the original on July 30, Retrieved June 16, Through historical accident, we've ended up with a global network that pretty much allows anybody to communicate with anyone else at any time.

Devices could be reprogrammed by them at any time, including code written by other people, so you don't have to be a nerd to get the benefits of reprogramming it. Now, I see a movement away from that framework—even though it doesn't feel like a movement away.

Or whimsical applications that run on the Facebook platform or the new Google apps. These are controllable by their vendors in ways that Bill Gates never dreamed of controlling Windows applications.

Bill Gates is Mr. But for my purposes, even under the standard Windows operating system from , , you write the code, you can hand it to somebody else and they can run it. Bill Gates has nothing to say about it. So it's funny to think that by moving in Steve Jobs's direction it actually ends up far more proprietary. Archived from the original on June 7, Retrieved May 14, Retrieved May 25, Retrieved on July 30, Retrieved September 26, Retrieved July 13, Apple Store UK. Retrieved June 14, Archived from the original on July 14, Retrieved August 8, Schwartz July 7, Archived from the original on July 10, Retrieved October 23, Archived from the original on July 11, Retrieved July 9, Retrieved January 19, Chaos Computer Club.

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Retrieved June 4, Philippine Daily Inquirer. Retrieved April 25, April 20, Retrieved April 22, O'Reilly Media. April 27, Retrieved June 7, Beijing News. Retrieved October 27, Do you know who your iPhone is talking to? ISSN Retrieved September 16, The Next Web. September 7, Retrieved September 7, July 8, August 12, Bloomberg News. Archived from the original on February 17, The United States government has demanded that Apple take an unprecedented step which threatens the security of our customers.

We oppose this order, which has implications far beyond the legal case at hand. FBI: A timeline of the iPhone encryption case". March 15, Retrieved March 15, Vice Media. Leaked emails from one of these communities showed how some members were confident that Grayshift, the company behind the GrayKey product, had already found a workaround to a new security feature from Apple called USB Restricted Mode. Retrieved September 21, Retrieved April 23, Government Data Requests ".

Electronic Frontier Foundation. Cult of Mac. International Data Group. Archived from the original on August 10, Android Authority. Comscore, Inc. Buy an iPhone". Daily Telegraph. Retrieved August 15, Meet the "ladyphones" ". Retrieved February 8, The Globe and Mail. The Register. Retrieved August 2, I've seen the established players become lazy and complacent, go down blind alleys, or standardize on horrible designs and feature sets.

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These form four tightly intertwined finger structures that we describe by analogy to primate anatomy where there are index, middle, ring, and pinky fingers in addition to a thumb Figure 1C.

Overview of poliovirus 3D pol RdRp structure. A Comparison of the original partial structure yellow with the complete structure shown with the fingers domain in red, the palm in gray, the thumb in blue, and the active site colored magenta. The N-terminal strand residues 12—36 of the original structure that descended toward the active site is shown in green.

The two structures were superimposed using the backbone atoms of the active site GDD motif and three residues on either side of it i. B Superimposition of the thumb domains from the original structure yellow and new complete structure blue showing that the thumb structure is largely unchanged by the two mutations LD and RD used to break Interface I and crystallize 3D pol in a new lattice. The side chains of Phe30 and Phe34 are shown in green for the original structure and red for the new complete structure.

C Top view of the complete 3D pol structure highlighting the individual fingers of the fingers domain. The index finger is shown in green, the middle finger in orange, the ring finger in yellow, and the pinky finger in pink.

As in A , the palm is shown in gray, the thumb is in blue, and the active site is colored magenta. Phe30 and Phe34 are shown as sticks, Pro on the pinky finger is indicated with spheres, and glycines and are colored in cyan. D Bar representation of the 3D pol sequence colored according to the structural elements shown in C. Sections of the sequence in the palm are in gray and the numbers correspond to the first residue in a given structural motif. The fingers begin with a buried N-terminus at the back of the palm, which plays a critical role in structuring the active site see below.

The index finger residues 1—68, green in Figure 1C then rises from the palm domain for eight residues before folding into a loop and reaching across the palm to interact with the thumb. This conformation is anchored by the insertion of Phe30 and Phe34 into the hydrophobic core at the top of the thumb. Following this, residues 35—68 fold back toward the palm domain in a generally extended structure that completes the index finger. This sheet also includes the first eight residues of the index finger, and the tip of the middle finger is inserted into the loop formed by residues 9—17 of the index finger.

Lys, the only Ramachandran plot outlier in the structure, is located at the tip of the middle finger. There is not an obvious structural reason for the distorted geometry, but there may be a functional requirement for a basic residue at this position because a KL mutation reverts in vivo to an arginine residue Richards and Ehrenfeld, The ring finger forms the roof of the NTP entry tunnel and contains conserved basic residues Arg, Lys, Arg that are poised for interactions with the incoming NTP.

The top of the pinky finger appears to be quite flexible because it has relatively weak electron density. Structural details of the 3D pol fingers domain and buried N-terminus. A Structure of the fingers domain highlighting the extensive network of hydrogen bonds linking the N-terminus blue sphere at lower left and N-terminal strand of the index finger to the middle and ring fingers. Note the putative template entry channel separating pinky finger pink carbon atoms from the rest of the fingers domain and how the ring finger yellow is an insertion in the pinky finger structure.

Proline and glycines and that may play a role in template binding are highlighted see Discussion. The view is from the left side of Figure 1A and C. B Electron density map of the region surrounding the buried N-terminus. The map is a 2. The view is from the left side as compared to A , the carbon atoms of the various structural motifs are colored as in Figure 1C and D , and corresponding sections of the density map are colored differently for clarity.

The intertwined structures of the four fingers are stabilized by a multitude of interactions where one set of interactions will form the platform upon which another set of interactions is built. The edge of this sheet is then hydrogen bonded to the backbone of the ring finger, stabilizing the ring finger as it crosses the top of the active site to form the roof of the NTP entry tunnel. The finger structure is further anchored by a well-ordered salt bridge between Lys61 on the index finger and Asp on the ring finger that lines the side of the NTP entry tunnel.

A mutation of Lys61 to leucine abolishes polymerase activity Richards et al , At the top of the NTP entry tunnel, there are a number of hydrogen bonding and van der Waals packing interactions between the index finger and the ring finger that are dependent on a kink in the index finger structure. This kink is stabilized by hydrogen bonding interactions involving Pro40, Glu47, and Arg49, and these residues are highly conserved across picornaviruses, suggesting that the kink is common to all these viral polymerases.

The most remarkable and unique feature of the poliovirus 3D pol structure is an elegant proteolytic processing-dependent allosteric switch for polymerase activation that involves burying the N-terminal glycine residue in a pocket at the base of the fingers domain Figure 2B. When the three 3D pol structures are superimposed using the protein backbone of the active site Gly-Asp-Asp motif and three residues on either side of it residues — , there is a clear 1.

Importantly, this movement is relative to the other active site residues, which are highly superimposable among the three structures. The residue is essential in poliovirus 3D pol , as a mutation of Asp to alanine abolishes poliovirus polymerase activity and viral viability Gohara et al , The source of the Asp movement can be traced to a pair of hydrogen bonds between the buried N-terminus and the backbone carbonyls of residues and These act to pull the polypeptide backbone of residues — up toward the buried N-terminus, pushing Asp into the active site.

This conformation is further stabilized by pairs of backbone hydrogen bonds linking residues — and — Figure 3A. Most side chains have been omitted for clarity and residues — of the active site magenta were used for the superimpositions. The GTP makes bridging interactions between the fingers and palm domains. The base is staked on Arg from the ring finger, the ribose interacts with Arg from the ring finger and Asp in the palm, and the triphosphate interacts with Arg and Lys from the ring finger and the backbone of the palm domain.

The structures of the G1A mutant orange , DA mutant teal, only residues — are shown , and original partial structure without a buried N-terminus red are superimposed using the active site. The binding pocket for the N-terminal glycine residue is itself almost entirely composed of glycines and the structure makes use of both the small size and backbone torsional flexibility of this amino acid. There is no formal charge counter-ion for the buried N-terminus.

 


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